Santa Clara, CA beats the national average by $16,775 (16.2%), and Lakes, AK furthers that trend with another $18,798 (18.1%) above the $103,661 average. … What are Top 10 Highest Paying Cities for Microsoft Software Engineer Jobs. CityLos Angeles, CAAnnual Salary$117,701Monthly Pay$9,808Weekly Pay$2,263How Much Do Microsoft Software Engineer Jobs Pay per Month www.ziprecruiter.com › Salaries › Microsoft-Software-Engineer-Salary-per…